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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109184193_109184952_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109184193 - 109184952
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTCTTGTGAAAC
Flanking Amino Acid:
NSVELSINAEVYSLPSKKLV
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.8
88.7
25.2
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
85.8
0.81
0.6
81.6
23.2
Minor 5ss
42.3
-0.8
2.8
59.2
45.4
Minor BPS
47.4
-0.2
2.2
63.83
41.7

Associated Gene:

Gene:
PSMG2
Ensembl Gene ID:
ENSAPLG00000010098
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010532
109182474 - 109190786
8313