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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109186083_109186990_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109186083 - 109186990
Intron Length:
908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTTG
5'SS Class:
major
3'SS Sequence:
GATCTGTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TGTTCTTGATCT
Flanking Amino Acid:
AYQRDDEQLLGTPLRYLLTP
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
71.4
41.2
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
66.8
0.38
0.9
57.9
42.8
Minor 5ss
49.5
-0
2.4
58.1
46.5
Minor BPS
62.6
0.47
1.7
81.71
39.7

Associated Gene:

Gene:
PSMG2
Ensembl Gene ID:
ENSAPLG00000010098
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010532
109182474 - 109190786
8313