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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109187165_109190146_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109187165 - 109190146
Intron Length:
2982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TATAAAAGAAAC
Flanking Amino Acid:
GGITKLLFTESCSKGIQMAV
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
78.6
0.71
1
78.6
31
Major PPT
84.9
0.78
0.8
79.9
32.1
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
38.4
-0.9
2
50.95
37.9

Associated Gene:

Gene:
PSMG2
Ensembl Gene ID:
ENSAPLG00000010098
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010532
109182474 - 109190786
8313