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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10919183_10922134_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10919183 - 10922134
Intron Length:
2952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTCTCTGACT
Flanking Amino Acid:
FARWAKLHGKLSTRTPSHGD
Intron Amino Acid Position:
669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.8
0.81
0.8
80.7
31.4
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
66.6
0.6
1.6
83.72
37.5

Associated Gene:

Gene:
ADARB2
Ensembl Gene ID:
ENSAPLG00000012729
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013255
10917225 - 11045478
128254