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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109196505_109201139_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109196505 - 109201139
Intron Length:
4635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGTTATA
5'SS Class:
major
3'SS Sequence:
TTGTATGTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
GAATCCGTGACT
Flanking Amino Acid:
KLNETERKRKRPRLTDT*
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
76
35
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
70.4
0.46
1
65.7
40.6
Minor 5ss
32.5
-2
3
41.9
44.8
Minor BPS
56.8
0.3
2.1
73.85
42.7

Associated Gene:

Gene:
PTPN2
Ensembl Gene ID:
ENSAPLG00000009603
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010045
109196483 - 109227485
31003