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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109201242_109202726_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109201242 - 109202726
Intron Length:
1485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CATTGCATAACT
Flanking Amino Acid:
PSKVQDGNIESTVRKRLRED
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.6
32.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.8
0.8
0.9
91.3
21
Minor 5ss
30.6
-2.2
3.4
39.4
46.5
Minor BPS
57.3
0.31
2.1
78.13
43.8

Associated Gene:

Gene:
PTPN2
Ensembl Gene ID:
ENSAPLG00000009603
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010045
109196483 - 109227485
31003