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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109202906_109205891_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109202906 - 109205891
Intron Length:
2986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
AATGTTTGAAAT
Flanking Amino Acid:
KFIMGDSTIQKRWKELSKED
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
84.7
0.78
0.8
79.6
32.4
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
49
0
1.6
65.24
39.1

Associated Gene:

Gene:
PTPN2
Ensembl Gene ID:
ENSAPLG00000009603
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010045
109196483 - 109227485
31003