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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109207834_109215018_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109207834 - 109215018
Intron Length:
7185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGCTTT
5'SS Class:
major
3'SS Sequence:
TTTTCACTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTGTTTTCACT
Flanking Amino Acid:
VHLLQLENINSGESRMISHF
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.3
78.8
38.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.6
0.73
0.8
74.9
35
Minor 5ss
54.2
0.14
2.7
72.8
37.2
Minor BPS
61.3
0.44
1.8
82.56
39.6

Associated Gene:

Gene:
PTPN2
Ensembl Gene ID:
ENSAPLG00000009603
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010045
109196483 - 109227485
31003