Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109215157_109216290_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

109215157 - 109216290

Intron Length:

1134

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

TTTAATAACTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATA

Flanking Amino Acid:

MLNRIVEKESVKCAQYWPTK

Intron Amino Acid Position:

164

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.9

76.5

39.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

65.9

0.36

64.1

41.4

Minor 5ss

34.9

-1.7

3.3

46.3

Minor BPS

82.2

1.01

0.9

86.33

25.3

Associated Gene:

Gene:

PTPN2

Ensembl Gene ID:

ENSAPLG00000009603

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010045

109196483 - 109227485

31003