About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109217179_109224817_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109217179 - 109224817
Intron Length:
7639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TAATTCTTAAGT
Flanking Amino Acid:
NRNRYRDVSPYDHSRVKLQN
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
77.2
0.61
0.8
74.8
33.6
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
70
0.71
1.6
81.69
39.6

Associated Gene:

Gene:
PTPN2
Ensembl Gene ID:
ENSAPLG00000009603
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010045
109196483 - 109227485
31003