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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109224909_109227287_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109224909 - 109227287
Intron Length:
2379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCGCG
5'SS Class:
major
3'SS Sequence:
TTGTCTCTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAA
U12 Branch Point Sequence:
TGTCTCTTAAAG
Flanking Amino Acid:
ATNDWQARYLEIRHKSSDYP
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
58.5
40.7
Major BPS
62.3
0.31
1
59.3
37.5
Major PPT
74.5
0.55
1
75.1
33.8
Minor 5ss
31.4
-2.1
3.2
35.7
42.1
Minor BPS
64.5
0.32
1.5
66.95
40.1

Associated Gene:

Gene:
PTPN2
Ensembl Gene ID:
ENSAPLG00000009603
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010045
109196483 - 109227485
31003