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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109330622_109330920_F

Intron Information:

Intron Rank:
135917
Intron Class:
major
Intron Phase:
Intron Coordinates:
109330622 - 109330920
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGGCAC
5'SS Class:
major
3'SS Sequence:
TTTCTTTACATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATTTTTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.3
63.9
42.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.5
0.66
0.8
76.8
30.8
Minor 5ss
26.5
-2.7
3
32.8
42.2
Minor BPS
76.7
0.82
1
78.69
30.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023195
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047203
109330426 - 109332381
1956
ENSAPLT00000044668
109330426 - 109333614
3189