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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109368159_109368339_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
109368159 - 109368339
Intron Length:
181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTTAGGTGA
5'SS Class:
weak_major
3'SS Sequence:
CCATTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTATTGTCATCT
Flanking Amino Acid:
STGSTLLADSSVADLKHAIQ
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.3
0.05
1.4
51.4
42
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
85.6
0.8
0.8
83.8
30.9
Minor 5ss
34
-1.8
3.1
40
40.4
Minor BPS
46.4
-0.1
2.4
72.57
44.3

Associated Gene:

Gene:
RB1CC1
Ensembl Gene ID:
ENSAPLG00000003339
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037091
109368103 - 109405240
37138