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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109368891_109379437_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109368891 - 109379437
Intron Length:
10547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GTGACTTTCATT
Flanking Amino Acid:
TVASRTQLAVEMYEVAKKLC
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
95.5
1.02
0.5
88.9
28.1
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
52
0.14
1.8
68.89
42.6

Associated Gene:

Gene:
RB1CC1
Ensembl Gene ID:
ENSAPLG00000003339
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037091
109368103 - 109405240
37138
ENSAPLT00000003463
109367179 - 109413009
45831