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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1093787_1095878_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1093787 - 1095878
Intron Length:
2092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
AATCTCTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
GATTTCCTAATG
Flanking Amino Acid:
ASVRATLADTECWDLSAGNL
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
69.1
41.8
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
76.8
0.6
0.9
73.7
35.9
Minor 5ss
38.1
-1.3
3
48.4
41.1
Minor BPS
56.7
0.07
1.7
61.86
40

Associated Gene:

Gene:
PTH1R
Ensembl Gene ID:
ENSAPLG00000005598
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005825
991927 - 1103775
111849