Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109379641_109380711_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

109379641 - 109380711

Intron Length:

1071

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAGGTTTG

5'SS Class:

major

3'SS Sequence:

CTTTTTAAAAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTGTTTTCACC

Flanking Amino Acid:

SIDDIKLKLTHLGSAVSIMA

Intron Amino Acid Position:

194

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.4

0.41

1.1

63.8

43.3

Major BPS

90.4

0.7

90.2

19.3

Major PPT

62.6

0.28

1.2

65.6

38.1

Minor 5ss

44.6

-0.6

3.1

62.9

42.9

Minor BPS

58.2

0.24

1.8

72.92

38.9

Associated Gene:

Gene:

RB1CC1

Ensembl Gene ID:

ENSAPLG00000003339

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037091

109368103 - 109405240

37138

ENSAPLT00000003463

109367179 - 109413009

45831