Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109393900_109394756_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

109393900 - 109394756

Intron Length:

857

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

TTTCTTTGCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTTAAATAACC

Flanking Amino Acid:

AKRESFGKLFRKSFLRNRLF

Intron Amino Acid Position:

548

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

78.5

35.5

Major BPS

90.4

0.7

90.2

19.3

Major PPT

0.72

0.9

76.4

37.6

Minor 5ss

40.6

-1.1

2.8

58.6

39.3

Minor BPS

56.9

0.2

2.1

78.22

36.4

Associated Gene:

Gene:

RB1CC1

Ensembl Gene ID:

ENSAPLG00000003339

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037091

109368103 - 109405240

37138

ENSAPLT00000003463

109367179 - 109413009

45831