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Intron Name: Anas_platyrhynchos_platyrhynchos_2_109398111_109405089_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

109398111 - 109405089

Intron Length:

6979

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CTTTAAATTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

TGTTCTTTAAAT

Flanking Amino Acid:

TITDLLNEQKASNSQASPQS

Intron Amino Acid Position:

646

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.91

0.8

80.6

31.9

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

72.9

0.51

0.9

63.8

41.5

Minor 5ss

41.4

-1

3.1

45.7

Minor BPS

79.4

1.2

90.2

33.2

Associated Gene:

Gene:

RB1CC1

Ensembl Gene ID:

ENSAPLG00000003339

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037091

109368103 - 109405240

37138

ENSAPLT00000003463

109367179 - 109413009

45831