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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109411216_109412975_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109411216 - 109412975
Intron Length:
1760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCAGTAATA
Flanking Amino Acid:
IRTSLTAEQQTNFNTVLARE
Intron Amino Acid Position:
1338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
72.8
39.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
39.7
-1.2
3.4
55
49.2
Minor BPS
55.7
0.18
2.2
74.94
36.6

Associated Gene:

Gene:
RB1CC1
Ensembl Gene ID:
ENSAPLG00000003339
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003463
109367179 - 109413009
45831