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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109413786_109414689_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109413786 - 109414689
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTTTTAATG
Flanking Amino Acid:
STMETSMMAVHENVHMSEEK
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89
0.88
0.6
85.4
21.8
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
70.4
0.5
1.2
71.97
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022776
109413410 - 109414912
1503