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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109494266_109520958_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109494266 - 109520958
Intron Length:
26693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATTAT
U12 Branch Point Sequence:
GATACATTATTT
Flanking Amino Acid:
AAPRQPPAVREIFPRDSSLK
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
63.3
0.33
1.1
54
41.2
Major PPT
85.6
0.8
0.6
85.7
21.5
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
49.4
0.03
1.9
68.39
42

Associated Gene:

Gene:
ALKAL1
Ensembl Gene ID:
ENSAPLG00000017834
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030596
109493890 - 109529230
35341