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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109526729_109528941_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
109526729 - 109528941
Intron Length:
2213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TAGTTATAAAAT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
93.2
0.97
0.6
88.8
20.4
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
47.7
-0.1
2
67.19
43.2

Associated Gene:

Gene:
ALKAL1
Ensembl Gene ID:
ENSAPLG00000017834
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030596
109493890 - 109529230
35341