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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109741871_109743794_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109741871 - 109743794
Intron Length:
1924

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CTTTTATTAACA
Flanking Amino Acid:
KLRTRSKGTKVQVDSIAQEL
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71
37.5
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
81.4
0.71
0.9
77.6
34.5
Minor 5ss
33.7
-1.9
2.8
31.9
42.5
Minor BPS
71.3
0.67
1.6
80.01
35.9

Associated Gene:

Gene:
ST18
Ensembl Gene ID:
ENSAPLG00000003822
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041585
109638485 - 109810149
171665
ENSAPLT00000031902
109638485 - 109810149
171665
ENSAPLT00000003915
109624874 - 109810149
185276