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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109764919_109767733_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109764919 - 109767733
Intron Length:
2815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGGAAG
5'SS Class:
major
3'SS Sequence:
GATTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
AAGTCCTTATCT
Flanking Amino Acid:
IGGRQLFSNKHSPRPEKRET
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.3
69.6
42.7
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
80.4
0.68
0.9
74
36.3
Minor 5ss
33
-1.9
3.1
38.9
39.9
Minor BPS
69.3
0.68
1.6
79.81
41.9

Associated Gene:

Gene:
ST18
Ensembl Gene ID:
ENSAPLG00000003822
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041585
109638485 - 109810149
171665
ENSAPLT00000031902
109638485 - 109810149
171665
ENSAPLT00000003915
109624874 - 109810149
185276