About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109769755_109771748_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109769755 - 109771748
Intron Length:
1994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTTTG
5'SS Class:
major
3'SS Sequence:
TGTTTTCAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTCTTTACCT
Flanking Amino Acid:
HVNSNRNTHRSLSGCPIAAA
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
71.6
40.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
74.3
0.55
1
70.8
39
Minor 5ss
42.5
-0.8
3.1
57.9
46.8
Minor BPS
73.1
0.8
1.6
87.23
39

Associated Gene:

Gene:
ST18
Ensembl Gene ID:
ENSAPLG00000003822
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041585
109638485 - 109810149
171665
ENSAPLT00000031902
109638485 - 109810149
171665
ENSAPLT00000003915
109624874 - 109810149
185276