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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109771854_109773256_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109771854 - 109773256
Intron Length:
1403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCTTCCTCATTT
Flanking Amino Acid:
KVGQCHDQTHSTNLTKQPEV
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
86.3
0.82
0.8
83.9
31.1
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
61.8
0.45
1.8
79.99
42.5

Associated Gene:

Gene:
ST18
Ensembl Gene ID:
ENSAPLG00000003822
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031902
109638485 - 109810149
171665
ENSAPLT00000003915
109624874 - 109810149
185276
ENSAPLT00000041585
109638485 - 109810149
171665