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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109773463_109776690_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109773463 - 109776690
Intron Length:
3228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGCTTG
5'SS Class:
major
3'SS Sequence:
CTCTCTTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
CTCTCTTCAACA
Flanking Amino Acid:
QGRKTPQFLESKHFSNPVKF
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
71.7
40.8
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
76.8
0.6
0.8
72.9
30.5
Minor 5ss
49.9
-0
2.8
69.2
41.7
Minor BPS
64.8
0.46
1.6
71.01
41.7

Associated Gene:

Gene:
ST18
Ensembl Gene ID:
ENSAPLG00000003822
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041585
109638485 - 109810149
171665
ENSAPLT00000031902
109638485 - 109810149
171665
ENSAPLT00000003915
109624874 - 109810149
185276