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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10977443_11017233_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10977443 - 11017233
Intron Length:
39791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTCTTTCTGACT
Flanking Amino Acid:
SRSKCHHLPQDFADSVYQMV
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.7
30.1
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
80.2
0.68
0.9
76.9
37.3
Minor 5ss
27.6
-2.6
3.3
39.2
46.2
Minor BPS
59.4
0.38
1.6
78.91
37.7

Associated Gene:

Gene:
ADARB2
Ensembl Gene ID:
ENSAPLG00000012729
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013255
10917225 - 11045478
128254