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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109791509_109794228_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109791509 - 109794228
Intron Length:
2720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTCAC
5'SS Class:
major
3'SS Sequence:
TATCTTTGCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTATAT
Flanking Amino Acid:
HSRDLKKELITCPTPGCDGS
Intron Amino Acid Position:
729

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.3
68.4
38.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
72.2
0.5
0.9
68.6
37
Minor 5ss
30.4
-2.2
2.8
34.8
34.1
Minor BPS
56.1
0.27
2
78.55
43.3

Associated Gene:

Gene:
ST18
Ensembl Gene ID:
ENSAPLG00000003822
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031902
109638485 - 109810149
171665
ENSAPLT00000003915
109624874 - 109810149
185276
ENSAPLT00000041585
109638485 - 109810149
171665