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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109795178_109800209_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109795178 - 109800209
Intron Length:
5032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
CTTATTTTAAAG
Flanking Amino Acid:
SLMAANSQELKCPTPGCDGS
Intron Amino Acid Position:
773

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
74.8
0.62
1
67
39.8
Major PPT
77.3
0.62
1
78.1
33.8
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
56.9
0.08
1.5
60.51
41.6

Associated Gene:

Gene:
ST18
Ensembl Gene ID:
ENSAPLG00000003822
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031902
109638485 - 109810149
171665
ENSAPLT00000003915
109624874 - 109810149
185276
ENSAPLT00000041585
109638485 - 109810149
171665