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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109806591_109808860_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109806591 - 109808860
Intron Length:
2270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACAT
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
GTCCGTGTGACT
Flanking Amino Acid:
EADMMKLQTQITSMESNLKT
Intron Amino Acid Position:
960

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
73.4
37.3
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
77.8
0.63
0.9
72.9
37.4
Minor 5ss
39.7
-1.2
3.1
56
48.1
Minor BPS
42.5
-0.5
2.3
60.69
43.5

Associated Gene:

Gene:
ST18
Ensembl Gene ID:
ENSAPLG00000003822
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031902
109638485 - 109810149
171665
ENSAPLT00000003915
109624874 - 109810149
185276