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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109893372_109897130_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109893372 - 109897130
Intron Length:
3759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACTTCG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTTCTATTTACA
Flanking Amino Acid:
YLSTMVGLILGPFGINHGIE
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1.1
72.3
40.1
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
89.7
0.89
0.7
84.3
29.4
Minor 5ss
46.1
-0.4
2.5
59.5
45
Minor BPS
55.4
0.16
1.9
73.94
36.9

Associated Gene:

Gene:
PCMTD1
Ensembl Gene ID:
ENSAPLG00000021741
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021003
109888322 - 109913010
24689