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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109908929_109910476_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109908929 - 109910476
Intron Length:
1548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTTAG
5'SS Class:
major
3'SS Sequence:
TGTTCTTACGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TAACCACTAACT
Flanking Amino Acid:
GILVMPIEDQLTQILRTGQN
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
71
37.5
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
77.6
0.62
0.9
73.5
36
Minor 5ss
39.6
-1.2
2.8
48.7
47.5
Minor BPS
52.6
0.16
2
74.55
40.9

Associated Gene:

Gene:
PCMTD1
Ensembl Gene ID:
ENSAPLG00000021741
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021003
109888322 - 109913010
24689