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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1099328_1101260_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1099328 - 1101260
Intron Length:
1933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CTTTCCTTGTTC
Flanking Amino Acid:
AGRCDSRQQYRKLLKSTLVL
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
83.1
0.74
0.8
77.4
31.4
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
47.8
-0.1
3.5
73.12
38.9

Associated Gene:

Gene:
PTH1R
Ensembl Gene ID:
ENSAPLG00000005598
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005825
991927 - 1103775
111849