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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_110056485_110056635_R

Intron Information:

Intron Rank:
134455
Intron Class:
major
Intron Phase:
Intron Coordinates:
110056485 - 110056635
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCAAG
5'SS Class:
major
3'SS Sequence:
CTTTCTTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ACTTCTTATACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.7
41.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.9
0.79
0.8
80.9
29.9
Minor 5ss
38.8
-1.3
2.8
48.4
47.4
Minor BPS
53.7
0.2
2
73.68
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019628
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046545
110056328 - 110065322
8995