Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_110056702_110065211_R

Intron Information:

Intron Rank:

134456

Intron Class:

major

Intron Phase:

Intron Coordinates:

110056702 - 110065211

Intron Length:

8510

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTAAGTATA

5'SS Class:

major

3'SS Sequence:

TTTTCGTCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GACTCAT

U12 Branch Point Sequence:

GACTCATTCAGT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

81.2

32.7

Major BPS

69.4

0.48

1.2

71.6

36.4

Major PPT

83.3

0.75

0.7

81.8

30.3

Minor 5ss

41.5

-0.9

2.8

41.2

Minor BPS

45.4

-0.2

2.3

62.92

46.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019628

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046545

110056328 - 110065322

8995