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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_110074593_110075469_F

Intron Information:

Intron Rank:
143743
Intron Class:
major
Intron Phase:
Intron Coordinates:
110074593 - 110075469
Intron Length:
877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGGAAA
5'SS Class:
major
3'SS Sequence:
CTGCTTTCTTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.2
67
39.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
60.5
0.24
1.7
72.9
37.4
Minor 5ss
26.5
-2.7
3
30.7
42.9
Minor BPS
59.2
0.27
1.8
74
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027447
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032774
110074367 - 110076176
1810