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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_110085216_110085843_F

Intron Information:

Intron Rank:
126320
Intron Class:
major
Intron Phase:
Intron Coordinates:
110085216 - 110085843
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ACTGTTTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTGTTTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
1
80.1
38.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
69.6
0.44
1
69.7
41
Minor 5ss
40.5
-1.1
3.9
60.6
44.5
Minor BPS
57
0.3
1.7
74.6
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018049
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020149
110083822 - 110086095
2274