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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_110312363_110320299_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110312363 - 110320299
Intron Length:
7937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCATTTTAAAT
Flanking Amino Acid:
NTDTKQIEAKELEFSNLFAV
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.7
0.83
0.7
78.3
35.2
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
63.9
0.52
1.4
77.18
39.4

Associated Gene:

Gene:
SNTG1
Ensembl Gene ID:
ENSAPLG00000003975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032131
110312204 - 110462474
150271
ENSAPLT00000048525
110312204 - 110452214
140011
ENSAPLT00000004086
110312204 - 110474538
162335
ENSAPLT00000040957
110312204 - 110474538
162335
ENSAPLT00000037281
110312204 - 110452062
139859
ENSAPLT00000035887
110312204 - 110462474
150271