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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_110320411_110335958_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110320411 - 110335958
Intron Length:
15548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
GFVCFDAATKAVLWRYKFSQ
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
73.7
37.1
Major BPS
80
0.75
1
78.6
31
Major PPT
84.2
0.77
0.6
82.6
22
Minor 5ss
32.7
-2
3.8
49.3
47.2
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
SNTG1
Ensembl Gene ID:
ENSAPLG00000003975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035887
110312204 - 110462474
150271
ENSAPLT00000032131
110312204 - 110462474
150271
ENSAPLT00000048525
110312204 - 110452214
140011
ENSAPLT00000004086
110312204 - 110474538
162335
ENSAPLT00000040957
110312204 - 110474538
162335
ENSAPLT00000037281
110312204 - 110452062
139859