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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_110358121_110381140_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110358121 - 110381140
Intron Length:
23020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCCGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
AATTTGTCAACA
Flanking Amino Acid:
INRNFPVNQQIVYMGWTEER
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
78.5
0.64
0.9
78.5
35.5
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
49.7
-0
2.2
66.97
39.3

Associated Gene:

Gene:
SNTG1
Ensembl Gene ID:
ENSAPLG00000003975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032131
110312204 - 110462474
150271
ENSAPLT00000048525
110312204 - 110452214
140011
ENSAPLT00000004086
110312204 - 110474538
162335
ENSAPLT00000040957
110312204 - 110474538
162335
ENSAPLT00000037281
110312204 - 110452062
139859
ENSAPLT00000035887
110312204 - 110462474
150271