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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_110381180_110407360_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110381180 - 110407360
Intron Length:
26181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCACTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
TCTTCTTTCACT
Flanking Amino Acid:
SNISNLTKHNIKKINRNFPV
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
81
0.7
0.8
76.1
32.4
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
72.5
0.79
1.7
87.23
39

Associated Gene:

Gene:
SNTG1
Ensembl Gene ID:
ENSAPLG00000003975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037281
110312204 - 110452062
139859
ENSAPLT00000035887
110312204 - 110462474
150271
ENSAPLT00000048525
110312204 - 110452214
140011
ENSAPLT00000032131
110312204 - 110462474
150271
ENSAPLT00000040957
110312204 - 110474538
162335
ENSAPLT00000004086
110312204 - 110474538
162335