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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_110407491_110413644_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
110407491 - 110413644
Intron Length:
6154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAAG
5'SS Class:
strong_major
3'SS Sequence:
GACATGTCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTCTTCTGACCT
Flanking Amino Acid:
SQYLPGSDLCRQNAFQVIAV
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
62
0.27
1
53.8
41.2
Minor 5ss
31
-2.2
3.2
38.7
46.6
Minor BPS
60.8
0.42
1.8
80.07
42.1

Associated Gene:

Gene:
SNTG1
Ensembl Gene ID:
ENSAPLG00000003975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037281
110312204 - 110452062
139859
ENSAPLT00000035887
110312204 - 110462474
150271
ENSAPLT00000032131
110312204 - 110462474
150271
ENSAPLT00000048525
110312204 - 110452214
140011
ENSAPLT00000004086
110312204 - 110474538
162335
ENSAPLT00000040957
110312204 - 110474538
162335