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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_110418705_110427467_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110418705 - 110427467
Intron Length:
8763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
ATTTATTTCAGT
Flanking Amino Acid:
HELLHHLSTEVQVLRNAGEE
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.2
31.7
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
86.3
0.82
0.8
77.9
35.9
Minor 5ss
39.4
-1.2
3.3
56.7
47.6
Minor BPS
49
0
2.2
74.83
42.2

Associated Gene:

Gene:
SNTG1
Ensembl Gene ID:
ENSAPLG00000003975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037281
110312204 - 110452062
139859
ENSAPLT00000035887
110312204 - 110462474
150271
ENSAPLT00000004086
110312204 - 110474538
162335