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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_110438957_110441307_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
110438957 - 110441307
Intron Length:
2351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TTGTGCAAAACA
Flanking Amino Acid:
VISKISKEQRAELSGLLFIG
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
47.8
-0.1
2.3
67.91
44.5

Associated Gene:

Gene:
SNTG1
Ensembl Gene ID:
ENSAPLG00000003975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035887
110312204 - 110462474
150271
ENSAPLT00000032131
110312204 - 110462474
150271
ENSAPLT00000048525
110312204 - 110452214
140011
ENSAPLT00000004086
110312204 - 110474538
162335
ENSAPLT00000040957
110312204 - 110474538
162335
ENSAPLT00000037281
110312204 - 110452062
139859