About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_110441366_110446632_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110441366 - 110446632
Intron Length:
5267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATTATATCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTCCATTTATT
Flanking Amino Acid:
TVGGFGLSIKGGAEHNIPVV
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
81.6
33.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
78.8
0.65
0.9
75.1
39.3
Minor 5ss
42.5
-0.8
3.4
64.3
47.2
Minor BPS
59.8
0.39
1.9
83.13
37.4

Associated Gene:

Gene:
SNTG1
Ensembl Gene ID:
ENSAPLG00000003975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004086
110312204 - 110474538
162335
ENSAPLT00000040957
110312204 - 110474538
162335
ENSAPLT00000037281
110312204 - 110452062
139859
ENSAPLT00000035887
110312204 - 110462474
150271
ENSAPLT00000032131
110312204 - 110462474
150271
ENSAPLT00000048525
110312204 - 110452214
140011