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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_110446690_110461736_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110446690 - 110461736
Intron Length:
15047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
AAAATTTAACTT
Flanking Amino Acid:
CVSGEPFYSGERTVTIRRQT
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
74.7
41.5
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
100
1.12
0.4
100
0
Minor 5ss
39.4
-1.2
2.9
52.3
44.3
Minor BPS
42
-0.5
1.7
52.07
37

Associated Gene:

Gene:
SNTG1
Ensembl Gene ID:
ENSAPLG00000003975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035887
110312204 - 110462474
150271
ENSAPLT00000032131
110312204 - 110462474
150271
ENSAPLT00000004086
110312204 - 110474538
162335
ENSAPLT00000040957
110312204 - 110474538
162335