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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_110461872_110474483_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110461872 - 110474483
Intron Length:
12612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTC
Flanking Amino Acid:
MDFRTACEETKTGICLLQD
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.4
35.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77.2
0.61
1
78.5
27.6
Minor 5ss
36.8
-1.5
3.3
48.1
47.6
Minor BPS
73.1
0.7
1.5
81.83
32.8

Associated Gene:

Gene:
SNTG1
Ensembl Gene ID:
ENSAPLG00000003975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040957
110312204 - 110474538
162335
ENSAPLT00000004086
110312204 - 110474538
162335