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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_110817530_110817826_F

Intron Information:

Intron Rank:
144671
Intron Class:
major
Intron Phase:
Intron Coordinates:
110817530 - 110817826
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
GCTCATTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTCTGCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
36.2
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
78.9
0.65
0.9
71.7
37.9
Minor 5ss
30.7
-2.2
3.2
38
46.8
Minor BPS
48.1
-0
2.2
71.65
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027959
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031322
110817345 - 110823266
5922