Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111013452_111038418_F

Intron Information:

Intron Rank:

145227

Intron Class:

major

Intron Phase:

Intron Coordinates:

111013452 - 111038418

Intron Length:

24967

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATAGTT

5'SS Class:

strong_major

3'SS Sequence:

GTTTTTTGTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCCTCAG

U12 Branch Point Sequence:

GTTTTTTTGTTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

80.9

31.4

Major BPS

46.3

-0.2

1.6

53.3

44.2

Major PPT

83.6

0.76

0.9

76.9

42.1

Minor 5ss

36.4

-1.5

3.6

56.3

47.9

Minor BPS

44.5

-0.3

3.4

74.33

37.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028309

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023568

111013262 - 111039416

26155